R/processOthers.R
process_AllergyIntolerance.Rdextract information from retained fields in AllergyIntolerance component of FHIR Bundle, produce simple data.frame
process_AllergyIntolerance(AllergyIntolerance)component of FHIR.bundle instance
data.frame
testf <- system.file("json/Vince741_Rogahn59_6fa3d4ab-c0b6-424a-89d8-7d9105129296.json",
package="BiocFHIR")
tbun <- process_fhir_bundle(testf)
process_AllergyIntolerance(tbun$AllergyIntolerance)
#> id onsetDateTime
#> 1 47b487dc-bfd6-45d0-905c-7fb57fdf0eec <NA>
#> 2 7cae18c7-d810-4161-adcd-b6b2e0a3a855 <NA>
#> 3 b3f46468-3742-4fe9-81ec-ae843d0c419b <NA>
#> 4 46a360fd-525f-41a1-a916-376e5bb7bf01 <NA>
#> 5 2f959fc6-c04e-4940-b08e-9f4ea1c009b6 <NA>
#> 6 86c1dd8f-e5f9-4775-b854-47164989928f <NA>
#> 7 4159b8ec-fec7-4b59-a003-e5be4cdfa5ba <NA>
#> 8 91fb5e1c-3ce2-474a-a56a-49cc8b26fe49 <NA>
#> patient.reference category code.system
#> 1 urn:uuid:eedf9986-9cf8-4e90-bf68-12a6dd9a31c2 food http://snomed.info/sct
#> 2 urn:uuid:eedf9986-9cf8-4e90-bf68-12a6dd9a31c2 food http://snomed.info/sct
#> 3 urn:uuid:eedf9986-9cf8-4e90-bf68-12a6dd9a31c2 food http://snomed.info/sct
#> 4 urn:uuid:eedf9986-9cf8-4e90-bf68-12a6dd9a31c2 food http://snomed.info/sct
#> 5 urn:uuid:eedf9986-9cf8-4e90-bf68-12a6dd9a31c2 food http://snomed.info/sct
#> 6 urn:uuid:eedf9986-9cf8-4e90-bf68-12a6dd9a31c2 food http://snomed.info/sct
#> 7 urn:uuid:eedf9986-9cf8-4e90-bf68-12a6dd9a31c2 food http://snomed.info/sct
#> 8 urn:uuid:eedf9986-9cf8-4e90-bf68-12a6dd9a31c2 food http://snomed.info/sct
#> code.code code.display
#> 1 419474003 Allergy to mould
#> 2 232350006 House dust mite allergy
#> 3 232347008 Dander (animal) allergy
#> 4 418689008 Allergy to grass pollen
#> 5 425525006 Allergy to dairy product
#> 6 420174000 Allergy to wheat
#> 7 91934008 Allergy to nut
#> 8 91935009 Allergy to peanuts