bash
docker run -it ghcr.io/vjcitn/biochandoff:devel RBiocHandoff
Package: BiocHandoff
Authors: Vincent Carey [aut, cre]
Compiled: 2025-07-23
Package version: 0.98.1
R version: R version 4.5.1 (2025-06-13)
BioC version: 3.22
License: MIT + file LICENSE
Welcome
This is the landing page of the BiocBook entitled βBiocHandoffβ.
This book introduces the reader to tasks required as staff members leave the organization.
We prefer a computable book to a static text or spreadsheet so that computations can be included and checked.
Docker image
A Docker image built from this repository is available here:
π ghcr.io/vjcitn/biochandoff π³
Get started now π
You can get access to all the packages used in this book in < 1 minute, using this command in a terminal:
RStudio Server
An RStudio Server instance can be initiated from the Docker image as follows:
bash
docker run \
--volume <local_folder>:<destination_folder> \
-e PASSWORD=OHCA \
-p 8787:8787 \
ghcr.io/vjcitn/biochandoff:develThe initiated RStudio Server instance will be available at https://localhost:8787.
Session info
Click to expand π
sessioninfo::session_info(
installed.packages()[,"Package"],
include_base = TRUE
)
## β Session info ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
## setting value
## version R version 4.5.1 (2025-06-13)
## os Ubuntu 24.04.2 LTS
## system x86_64, linux-gnu
## ui X11
## language (EN)
## collate C
## ctype en_US.UTF-8
## tz Etc/UTC
## date 2025-07-23
## pandoc 3.7.0.2 @ /usr/bin/ (via rmarkdown)
## quarto 1.6.42 @ /usr/local/bin/quarto
##
## β Packages ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
## package * version date (UTC) lib source
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## base * 4.5.1 2025-06-13 [3] local
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## BiocHandoff 0.98.1 2025-07-23 [1] local
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##
## [1] /tmp/RtmpEwWmlD/Rinst8d4da642e8
## [2] /usr/local/lib/R/site-library
## [3] /usr/local/lib/R/library
## * ββ Packages attached to the search path.
##
## βββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ