produce a SingleCellExperiment with totalVI quantifications of 10k PBMC data (excluding 5k PBMC data) with cells held in common with the OSCA ch12 CITE-seq example

Source: R/setup_vicite.R

produce a SingleCellExperiment with totalVI quantifications of 10k PBMC data (excluding 5k PBMC data) with cells held in common with the OSCA ch12 CITE-seq example

setup_vicite()

Examples

ss = setup_vicite()
ss
#> class: SingleCellExperiment 
#> dim: 4000 6821 
#> metadata(1): se.averaged
#> assays(1): logcounts
#> rownames(4000): AL645608.8 HES4 ... MT-CO3 AC240274.1
#> rowData names(7): highly_variable highly_variable_rank ...
#>   highly_variable_nbatches Symbol
#> colnames(6821): AAACCCAAGATTGTGA-1 AAACCCACATCGGTTA-1 ...
#>   TTTGTTGTCGAGTGAG-1 TTTGTTGTCGTTCAGA-1
#> colData names(1): leiden
#> reducedDimNames(0):
#> mainExpName: NULL
#> altExpNames(1): denoised_protein