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create a default configuration for several runUnivariate tasks

Source: R/process_mcmicro.R
default_uruns.Rd

create a default configuration for several runUnivariate tasks

Usage

default_uruns(
  assay4quants = "X",
  colGraphName = "spatNeigh",
  BPPARAM = BiocParallel::bpparam()
)

Arguments

assay4quants

character(1) name of assay component to use for univariate analysis,

colGraphName

character(1) defaults to 'spatNeigh' which is the name used within `process_mcmicro` for the colGraph production

BPPARAM

defaults to the `BiocParallel::bpparam()` value for the session at the time this function is called

Value

A closure. The intent is that the value is passed a vector of feature names. The resulting list has named elements. The name of each element is the 'type' of univariate statistical analysis, and the elements of the associated element are arguments to runUnivariate used with that analysis type.

Note

Any values supplied to dots in the returned closure must be present for all components for all desired runUnivariate calls.