cache and/or retrieve path to Xenium Lung Adenocarcinoma example data, zipped SPEP accompanied by parquet

cache and/or retrieve path to Xenium Lung Adenocarcinoma example data, zipped SPEP accompanied by parquet

cache_xen_luad(
  cache = BiocFileCache::BiocFileCache(),
  url = "https://mghp.osn.xsede.org/bir190004-bucket01/BiocXenData/luad2.zip"
)

Arguments

cache

defaults to BiocFileCache::BiocFileCache()

url

location where tiff file can be retrieved

Examples

if (interactive()) {
   pa = cache_xen_luad()
   luad = restoreZipXenSPEP(pa)
   print(luad)
   print(slot(luad, "cellbounds_path"))
   view_seg(luad, xlim=c(4000,4500), ylim=c(2000,2500))
}