render boundaries of cells with optional centroid positions and transcript positions

render boundaries of cells with optional centroid positions and transcript positions

plotCellBoundaries(
  xsce,
  add_cent = TRUE,
  cent_col = "red",
  cent_cex = 0.2,
  add_tx = TRUE,
  tx_cex = 0.1
)

Arguments

xsce

XenSCE instance

add_cent

logical(1)

cent_col

character(1) default to "red"

cent_cex

numeric(1) default to 0.2

add_tx

logical(1)

tx_cex

numeric(1)

Examples

dem = build_panc_subset()
plotCellBoundaries(clip_rect(dem, xlim=c(600,850), ylim=c(500,750)))