modify basic BioCypher configuration to reroute log and output to specified folders

modify basic BioCypher configuration to reroute log and output to specified folders

update_bc_config(
  confpath,
  outputDir = tempfile("biocyphOutput"),
  logDir = tempfile("biocyphLogs"),
  tmpstore = tempfile()
)

Arguments

confpath

character(1) path to a typical BioCypher configuration which by default would write log and output to current folder

outputDir

character(1) path to output

logDir

character(1) path to logs

tmpstore

path to revised configuration YAML