embeddings for PBMC3K based on 50 epochs of training by torch-biggraph for 4780 highly variable genes on 2700 cells.

Source: R/data.R

embeddings for PBMC3K based on 50 epochs of training by torch-biggraph for 4780 highly variable genes on 2700 cells.

nn50

Format

named list

Note

Built using sce_to_embeddings with t3k

Examples

data(nn50)
names(nn50)
#> [1] "cemb"   "gemb"   "cents"  "gents"  "stats"  "call"   "config"
nn50$call
#> sce_to_embeddings(sce = t3k, workdir = "myfold50b", N_EPOCHS = 50L, 
#>     N_GENES = 5000L, N_GPUS = 0L, BATCH_SIZE = 1000L, pbg = pbg, 
#>     palib = palib)