Package index
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PlinkMatrix() - Constructor for DelayedArray
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PlinkSeed-class - Define the PlinkSeed class
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PlinkSeed() - Constructor function for seed for plink bed format
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decode_bed_genotypes() - Helper function to decode BED format
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dim(<PlinkSeed>) - Method: dim for delayed plink
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dimnames(<PlinkSeed>) - Method: dimnames for delayed plink
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example_GRanges - sample GRanges coordinated with example_PlinkMatrix
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example_PlinkMatrix() - produce PlinkMatrix from example data
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extract_array(<PlinkSeed>) - Method: extract_array, internal
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g445samples - sample characteristics of 445 GEUVADIS samples
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getSampleData() - Get sample metadata
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getVariantData() - Get variant metadata
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get_plink_example_path() - operate with BiocFileCache to retrieve zip file of plink example data
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plid2gr() - produce GRanges from variant notation for plink example from geuvadis
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read_bed_subset() - read subset for use in delayed matrix approach
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show(<PlinkSeed>) - present seed concisely