Package index

All functions

NGparq()

obtain references to parquet serializations of slices of NCBI Gene annotation

geneFromCache()

populate cache with available parquet files if needed, return path to cached file

is_online()

utility to check for internet access for testing

mapIdsNG()

very preliminary analog of mapIds from AnnotationDbi, uses remote query to parquet for NCBI gene_info; the NG connotes NCBI Gene

print(<NGparq>)

print method for NGparq list

processDbx()

given a bar-delimited string as produced for dbXrefs in gene_info, extract the value associated with a given tag

processDbx1()

given an element of a bar-delimited string as produced for dbXrefs in gene_info, extract the value associated with a given tag

remote_gene_query()

use duckdb to query NCBI Gene data in OSN bucket

taxonomyMap()

retrieve a vector of taxonomy names indexed by taxonomy codes