use Anh Vu's OpenAI prompting to develop structured metadata about Bioconductor packages, targeting EDAM ontology and bio.tools schema — edamize • biocEDAM

use Anh Vu's OpenAI prompting to develop structured metadata about Bioconductor packages, targeting EDAM ontology and bio.tools schema

Usage

edamize(
  devurl =
    "https://raw.githubusercontent.com/GreenleafLab/chromVAR/refs/heads/master/README.md",
  temp = 0
)

Arguments

devurl: character(1) a URL for doc originating from the developer
temp: numeric(1) temperature setting for openAI chat, see `https://gptcache.readthedocs.io/en/latest/bootcamp/temperature/chat.html`, defaults to 0.0

Value

two python dicts, base_final and edam_processed

Examples

if (interactive()) {
  key = Sys.getenv("OPENAI_API_KEY")
  if (nchar(key)==0) stop("need to have OPENAI_API_KEY set")
  lk = edamize()
  str(lk)
}