Package index

All functions

allmap

map from biocViews to EDAM

bioc_line()

use BiocPkgTools to acquire metadata on a specified Bioconductor package

biotools_bioc

result of scanning biotools metadata on 3 Nov 2024 to find bioconductor packages and EDAM topics

bvbrowse()

interactive exploration of biocViews in relation to packages

cleantxt()

utility to "clean" odd characters in text input that seem to increase risk of json-transformation failures

curate_bioc()

use Anh Vu's OpenAI prompting to develop structured metadata about Bioconductor packages, targeting EDAM ontology and bio.tools schema

edamize()

use Anh Vu's OpenAI prompting to develop structured metadata about Bioconductor packages, targeting EDAM ontology and bio.tools schema

mkdf()

simple utility to process output of edamize into data.frame

pksByViews()

helper for package listing

saved_views_2023.18.11

dated set of biocViews

tag_bioc()

full workflow to tag a bioconductor package and selected representative content with EDAM terms

toline()

process the output of edamize followed by mkdf to create a data frame with components topic, operation, data, format, reflecting main elements of EDAM

vig2data()

use the extract_data facility defined in ellmer's doc to obtain summary information about an html document, tailored to vignettes in bioconductor

vlist

snapshot of all biocViews