process the output of edamize followed by mkdf to create a data frame with components topic, operation, data, format, reflecting main elements of EDAM

process the output of edamize followed by mkdf to create a data frame with components topic, operation, data, format, reflecting main elements of EDAM

Usage

toline(x)

Arguments

x

output of mkdf

Value

a data.frame

Examples

df <- data.frame(
    uri = c("http://edamontology.org/topic_3308",
            "http://edamontology.org/operation_2238",
            "http://edamontology.org/data_3112",
            "http://edamontology.org/format_3475"),
    tm  = c("Transcriptomics", "Statistical calculation",
            "Gene expression matrix", "TSV"),
    stringsAsFactors = FALSE)
toline(df)
#>                    topic                      operation
#> 1 Transcriptomics (3308) Statistical calculation (2238)
#>                            data     format
#> 1 Gene expression matrix (3112) TSV (3475)