Filter VCF with multiple criteria
Usage
filterVcfMultipleCriteria(
vcf,
min_per_genotype = NULL,
min_maf = NULL,
min_call_rate = NULL
)
Arguments
- vcf
VCF object
- min_per_genotype
Minimum samples per genotype group
- min_maf
Minimum minor allele frequency
- min_call_rate
Minimum call rate
Value
Filtered VCF object