WS2 Introduction to transcriptomics with Bioconductor 3.12

Vince Carey¹

Transcriptome analysis via bulk RNA-seq

What’s already done: the recount3 compendium

Your own sequencing: tximport, tximeta to DESeq2

Single-cell RNA-seq

The CONQUER compendium

Your own sequencing: alevin …

Gene set methods in brief: working with MSigDb, TFtools

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1. stvjc@channing.harvard.edu↩︎