a snapshot of output of ieugwasr::gwasinfo()
gwidf_2021_01_30data.frame
Includes 'batchcode' computed by code commented out in example
# batchcode = strsplit(gwidf_2021_01_30$id, "-")
# batchcode = sapply(batchcode,function(x) paste0(x[1], "-", x[2]))
head(gwidf_2021_01_30)
#> id trait coverage
#> 1 ieu-b-73 Alcoholic drinks per week whole genome
#> 2 ieu-b-72 Urinary sodium-potassium ratio whole genome
#> 3 eqtl-a-ENSG00000267355 ENSG00000267355 <NA>
#> 4 eqtl-a-ENSG00000119707 ENSG00000119707 <NA>
#> 5 eqtl-a-ENSG00000145632 ENSG00000145632 <NA>
#> 6 eqtl-a-ENSG00000144791 ENSG00000144791 <NA>
#> imputation_panel group_name year mr author
#> 1 HRC public 2019 1 Liu, M
#> 2 <NA> public 2020 1 Zanetti
#> 3 <NA> public 2018 1 Vosa U
#> 4 <NA> public 2018 1 Vosa U
#> 5 <NA> public 2018 1 Vosa U
#> 6 <NA> public 2018 1 Vosa U
#> consortium sex
#> 1 GWAS and Sequencing Consortium of Alcohol and Nicotine use Males and Females
#> 2 <NA> Males and Females
#> 3 NA Males and Females
#> 4 NA Males and Females
#> 5 NA Males and Females
#> 6 NA Males and Females
#> qc_prior_to_upload pmid population sample_size nsnp
#> 1 mapped rsids to genomic position 30643251 European 335394 11887865
#> 2 <NA> 32008434 European 326938 19420026
#> 3 <NA> NA European 4677 18842
#> 4 <NA> NA European 30935 19455
#> 5 <NA> NA European 31684 19623
#> 6 <NA> NA European 31470 18827
#> build study_design
#> 1 HG19/GRCh37 Meta-analysis of cohort/cross-sectional studies
#> 2 HG19/GRCh37 Cohort/cross-sectional study
#> 3 HG19/GRCh37 <NA>
#> 4 HG19/GRCh37 <NA>
#> 5 HG19/GRCh37 <NA>
#> 6 HG19/GRCh37 <NA>
#> covariates category subcategory doi
#> 1 ancestry PCs Continuous Behavioural 10.1038/s41588-018-0307-5
#> 2 age, sex, batch, PCs Continuous Biomarker 10.1161/hypertensionaha.119.14028
#> 3 <NA> NA NA <NA>
#> 4 <NA> NA NA <NA>
#> 5 <NA> NA NA <NA>
#> 6 <NA> NA NA <NA>
#> note priority unit ontology sd ncase ncontrol batchcode
#> 1 <NA> NA <NA> <NA> NA NA NA ieu-b
#> 2 <NA> NA <NA> <NA> NA NA NA ieu-b
#> 3 NA 0 NA NA NA NA NA eqtl-a
#> 4 NA 0 NA NA NA NA NA eqtl-a
#> 5 NA 0 NA NA NA NA NA eqtl-a
#> 6 NA 0 NA NA NA NA NA eqtl-a