Package index

All functions

genome(<GTFParquet>) seqinfo(<GTFParquet>)

GTFParquet class

GTFParquet()

Create a GTFParquet object

gene_types() transcript_types()

List available gene or transcript types

protein_coding_genes() lncRNA_genes()

Convenience functions for common gene types

genes(<GTFParquet>) transcripts(<GTFParquet>) exons(<GTFParquet>) cds(<GTFParquet>)

Extract genomic features from a GTFParquet object

gtf_metadata()

Get GTF metadata

genes_in_region() transcripts_in_region()

Find features overlapping a genomic region

transcriptsBy(<GTFParquet>) exonsBy(<GTFParquet>) cdsBy(<GTFParquet>)

Extract and group genomic features from a GTFParquet object

utrs() codons()

Extract UTR and codon features from a GTFParquet object