gr38.Rdmutations (SNV) from TCGA ACC
gr38GRanges
gr38[1:5,1:6]
#> GRanges object with 5 ranges and 6 metadata columns:
#> seqnames ranges strand | Hugo_Symbol
#> <Rle> <IRanges> <Rle> | <character>
#> TCGA-OR-A5J1-01A-11D-A29I-10 chr1 11501469 + | PTCHD2
#> TCGA-OR-A5J1-01A-11D-A29I-10 chr1 12249327 + | VPS13D
#> TCGA-OR-A5J1-01A-11D-A29I-10 chr1 33354414 + | PHC2
#> TCGA-OR-A5J1-01A-11D-A29I-10 chr1 152827646 + | LCE1A
#> TCGA-OR-A5J1-01A-11D-A29I-10 chr1 152827655 + | LCE1A
#> Entrez_Gene_Id Center
#> <character> <character>
#> TCGA-OR-A5J1-01A-11D-A29I-10 57540 hgsc.bcm.edu;broad.m..
#> TCGA-OR-A5J1-01A-11D-A29I-10 55187 hgsc.bcm.edu;broad.m..
#> TCGA-OR-A5J1-01A-11D-A29I-10 1912 hgsc.bcm.edu;broad.m..
#> TCGA-OR-A5J1-01A-11D-A29I-10 353131 hgsc.bcm.edu
#> TCGA-OR-A5J1-01A-11D-A29I-10 353131 bcgsc.ca
#> NCBI_Build Variant_Classification Variant_Type
#> <character> <character> <character>
#> TCGA-OR-A5J1-01A-11D-A29I-10 37 Silent SNP
#> TCGA-OR-A5J1-01A-11D-A29I-10 37 Silent SNP
#> TCGA-OR-A5J1-01A-11D-A29I-10 37 Silent SNP
#> TCGA-OR-A5J1-01A-11D-A29I-10 37 Silent SNP
#> TCGA-OR-A5J1-01A-11D-A29I-10 37 Silent SNP
#> -------
#> seqinfo: 24 sequences from hg38 genome; no seqlengths