a snapshot of studies that are being curated

cmd3.0_studies

Format

data.frame

Examples

names(cmd3.0_studies)
#>  [1] "Dataset.Name"              "Bioproject"               
#>  [3] "Study.Accession"           "Publication"              
#>  [5] "PMID"                      "Publication.Year"         
#>  [7] "Bodysite"                  "Number.of.Samples"        
#>  [9] "Number.of.Missing.Samples" "Notes.on.N.of.Samples"    
#> [11] "Main.Country"              "Title"                    
#> [13] "Metadata"                 
head(cmd3.0_studies, 3)
#>            Dataset.Name  Bioproject Study.Accession
#> 1         AsnicarF_2017 PRJNA339914       SRP082656
#> 2         BackhedF_2015   PRJEB6456       ERP005989
#> 3 Bengtsson-PalmeJ_2015   PRJEB7369       ERP007090
#>                                  Publication     PMID Publication.Year
#> 1  https://doi.org/10.1128/mSystems.00164-16 28144631             2017
#> 2 https://doi.org/10.1016/j.chom.2015.04.004 25974306             2015
#> 3       https://doi.org/10.1128/AAC.00933-15 26259788             2015
#>      Bodysite Number.of.Samples Number.of.Missing.Samples
#> 1 Stool, Milk                24                        NA
#> 2       Stool               400                        19
#> 3       Stool                70                        NA
#>         Notes.on.N.of.Samples Main.Country
#> 1                                    Italy
#> 2 19 samples missing metadata       Sweden
#> 3                                   Sweden
#>                                                                                                     Title
#> 1 Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling
#> 2                    Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life
#> 3             The Human Gut Microbiome as a Transporter of Antibiotic Resistance Genes between Continents
#>   Metadata
#> 1       NA
#> 2       NA
#> 3       NA