humrna: a data.frame of SRA metadata related to RNA-seq in humans

Usage

humrna

Format

data.frame

Source

NCBI SRA

Note

arbitrarily chosen from RNA-seq studies for taxon 9606

Examples

data(humrna)
names(humrna)
#>  [1] "taxon_id"             "library_source"       "study_accession"     
#>  [4] "sample_accession"     "experiment_accession" "run_accession"       
#>  [7] "run_center_name"      "machine_type"         "paired_end"          
#> [10] "study_title"          "study_abstract"       "study_primary_id"    
head(humrna[,1:5])
#>   taxon_id library_source study_accession sample_accession experiment_accession
#> 1     9606 TRANSCRIPTOMIC       DRP000042        DRS000065            DRX000066
#> 2     9606 TRANSCRIPTOMIC       DRP000043        DRS000066            DRX000067
#> 3     9606 TRANSCRIPTOMIC       DRP000178        DRS000240            DRX000240
#> 4     9606 TRANSCRIPTOMIC       ERP013561       ERS1015600           ERX1263643
#> 5     9606 TRANSCRIPTOMIC       ERP013561       ERS1015603           ERX1263646
#> 6     9606 TRANSCRIPTOMIC       ERP013561       ERS1015601           ERX1263644