R/mapNaive.R
mapOneNaive.Rduse grep or agrep to find a match for a naive token into ontology
mapOneNaive(naive, onto, useAgrep = FALSE, ...)character(1)
an instance of ontologyIndex::ontology_index
logical(1) if TRUE, agrep will be used
passed to agrep if used
if a match is found, the result of grep/agrep with value=TRUE is returned; otherwise a named NA_character_ is returned
named vector, names are ontology identifiers, values are matched strings
#co = ontoProc::getCellOnto()
co = getOnto("cellOnto", year_added="2023")
#> loading from cache
mapOneNaive("astrocyte", co)
#> CL:0000127
#> "astrocyte"
#> CL:0002603
#> "astrocyte of the cerebellum"
#> CL:0002604
#> "hippocampal astrocyte"
#> CL:0002605
#> "astrocyte of the cerebral cortex"
#> CL:0002606
#> "astrocyte of the spinal cord"
#> CL:0002626
#> "immature astrocyte"
#> CL:0002627
#> "mature astrocyte"
#> CL:0012000
#> "astrocyte of the forebrain"
#> GO:0002265
#> "astrocyte activation involved in immune response"
#> GO:0014002
#> "astrocyte development"
#> GO:0021896
#> "forebrain astrocyte differentiation"
#> GO:0021897
#> "forebrain astrocyte development"
#> GO:0022031
#> "telencephalon astrocyte cell migration"
#> GO:0035700
#> "astrocyte chemotaxis"
#> GO:0036520
#> "astrocyte-dopaminergic neuron signaling"
#> GO:0043615
#> "astrocyte cell migration"
#> GO:0048143
#> "astrocyte activation"
#> GO:0048708
#> "astrocyte differentiation"
#> GO:0048710
#> "regulation of astrocyte differentiation"
#> GO:0048711
#> "positive regulation of astrocyte differentiation"
#> GO:0048712
#> "negative regulation of astrocyte differentiation"
#> GO:0061888
#> "regulation of astrocyte activation"
#> GO:0061889
#> "negative regulation of astrocyte activation"
#> GO:0061890
#> "positive regulation of astrocyte activation"
#> GO:0097449
#> "astrocyte projection"
#> GO:2000458
#> "regulation of astrocyte chemotaxis"
#> GO:2000459
#> "negative regulation of astrocyte chemotaxis"
#> GO:2000464
#> "positive regulation of astrocyte chemotaxis"