packDesc2023: overview of ontoProc resources
Note
Brief survey of functions available to load serialized ontology_index instances imported from OBO. Focus is on versions added in 2023. Several manual interventions were needed – cellosaurus was too large to use the script in inst/scripts/desc.R, and a number of ontologies do not have 2023 versions.
Examples
data(packDesc2023)
head(packDesc2023)
#> X name nclass nprop nroots datav
#> 1 1 caro 751 57 30 caro/releases/2022-02-18/caro-full.owl
#> 2 2 cellLineOnto 43596 204 110 <NA>
#> 3 3 cellOnto 17371 229 102 releases/2023-02-15
#> 4 4 cellosaurus 144570 NA 144571 44.0
#> 5 5 chebi_full 163735 34 13 218
#> 6 6 chebi_lite 163735 32 13 218
#> fmtv
#> 1 1.2
#> 2 1.2
#> 3 1.2
#> 4 1.2
#> 5 1.2
#> 6 1.2