visualize ontology selection via onto_plot2, based on owlents

visualize ontology selection via onto_plot2, based on owlents

plot.owlents(x, y, ..., dropThing = TRUE)

Arguments

x

owlents instance

y

character() vector of entries in x$clnames

...

passed to onto_plot2

dropThing

logical(1) defaults to TRUE; if "Thing" is present in terms to display, it is removed

Examples

cl3k = c("CL:0000492", "CL:0001054", "CL:0000236", 
  "CL:0000625", "CL:0000576", 
  "CL:0000623", "CL:0000451", "CL:0000556")
cl3k = gsub(":", "_", cl3k)
clont_path = owl2cache(url="http://purl.obolibrary.org/obo/cl.owl")
#> resource BFC60 already in cache from http://purl.obolibrary.org/obo/cl.owl
clont = setup_entities(clont_path)
plot(clont,cl3k)