R/subset_descendants.R
subset_descendants.Rd
subset a SummarizedExperiment to which ontology tags have been bound using 'bind_formal_tags', obtaining the 'descendants' of the class of interest
subset_descendants(
se,
onto,
class_name,
class_tag,
formal_cd_name = "label.ont"
)
SummarizedExperiment instance
representation of an ontology using representation from ontologyIndex package
character(1) if 'class_tag' is missing, this will be grepped in onto[["name"]] to find class and its descendants
character(1) used if given to identify "ontological descendants" of this term in se
character(1) tells name used for ontology tag column in `colData(se)`
instance of SummarizedExperiment