Function reference • BiocBuildTools

All functions
`PackageSet()`	constructor for PackageSet instances
`absent()`	list packages absent from current installation
`add_dependencies(<PackageSet>)`	method for adding dependencies to PackageSet as determined by BiocPkgTools
`bbs_check_built()`	not exported, rely instead on rcmdcheck do check_built and clean up
`bcclist_to_dataframes()`	helper function for extracting BiocCheck outputs
`bco2df()`	convert BiocCheck output (just error and warning) to list of data.frames
`bioc_coreset()`	define a small collection of packages of interest
`bioc_software_packagelist_old()`	get vector of Bioc software package names
`build1()`	prepare and build a package tarball, not exported because we use build1_with_buildsink to capture log
`build1_with_buildsink()`	run build1 and capture the R CMD build log
`build_sqlite_db()`	use outputs of get_checks and get_bcc to build a database of all events of error or warning
`combine_status_dbs()`	add records from 'incoming' database to 'target' database
`demo_bcchk_out`	a list of BiocCheck::BiocCheck results for demonstration purposes, produced nov 2020
`demo_rcmdcheck_out`	a list of rcmdcheck::rcmdcheck results for demonstration purposes, produced nov 2022
`.bco2df()`	helper for bco2df
`fulfill_deps()`	use BiocManager::install to get any unavailable dependencies as defined by BiocPkgTools
`full_dep_opts()`	a vector listing the key dependencies with correct orthography
`get_bcc()`	use bco2df to acquire limited data frames from BiocCheck applied to packages
`get_checks()`	run rcmdcheck on all sources associated with a PackageSet and drop the RDS outputs in a folder
`get_checks2()`	run rcmdcheck and BiocCheck on all sources associated with a PackageSet and drop the RDS outputs in separate folders
`getpk()`	use HTTPS to clone a package from Bioconductor git
`installed_r`	a vector of package names needed for a fairly complete BBS run, jul 7 2019
`last_commit_date()` `last_commit_date()`	use gert to get last commit date for a repo
`local_gits_behind_bioc()`	check all repos in a folder for version entry less than the one reported by BiocPkgTools::biocPkgList
`local_gits_with_uninstalled_dependencies()`	not clear that this is needed provide a list of packages for which dependencies are not installed
`populate_local_gits()`	use git via BiocBBSpack::getpk to retrieve sources into a folder
`rcclist_to_dataframes()`	produce list of data.frames for storage of R CMD check results in SQLite
`status_db_init()`	initialize a status database
`update_gits()`	attempt to identify packages that have had pushes since last collected
`update_status_db()`	add a dataframe, optionally purging related obsolete records, to a SQLite database

Reference

All functions