Genomes and their annotation in Bioconductor

Vincent J. Carey, stvjc at channing.harvard.edu

October 21, 2022

Source: vignettes/B_GenomesAnno.Rmd

Biostrings for nucleic and amino acid sequences

BSgenome: complete genomes for model organisms

BSgenome.Hsapiens.*

GenomeInfoDb

TxDb: gene models

GO, KEGG, Reactome, …: Gene sets, pathways

Variants, dbSNP