Large data concepts for genomic data science at CDNM

Vincent J. Carey, stvjc at channing.harvard.edu

October 21, 2022

Source: vignettes/D_LargeData.Rmd

Use cases

TOPMed transcriptomics

GWAS archives, OpenGWAS, gwaslake

recount3: all RNA-seq studies

GenomicSuperSignatures: reducing to key axes of variation

Multiplex imaging

Tools

RDBMS

HDF5

HSDS

Zarr