Package index
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as.data.frame() - S3 support
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as.data.frame(<default>) - S3 support
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as.data.frame(<hail.table.Table>) - convert hail.table.Table to R data frame
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bare_hail() - bare interface to hail using reticulate
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colnames(<hail.table.Table>) - extract field names from hail.table.Table
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filter() - s3 support
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filter(<hail.table.Table>) - filter rows of a hail Table
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get_1kg() - interface to 1kg import
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get_key() - S3 generic for get_key
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get_key(<hail.table.Table>) - S3 method for get_key
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get_ukbb_sumstat_10kloci_mt() - interface to a small subset of UKBB summary stats in MatrixTable format
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hail_init() - initialize hail, using more options
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hail_init_simple() - initialize hail
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hail_stop() - stop hail
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kg_3202 - data.frame with metadata about 3202 samples genotyped against T2T reference
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multipop_df() - pheno_data component harvesting from columns of summary stats MatrixTable allowing for info on multiple populations in the pheno_data component
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osn_1kg_path() - Open Storage Network path to a zip of hail MatrixTable with some 1kg data for the Hail.is GWAS tutorial
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osn_ukbb_sumst10k_path() - Open Storage Network path to a zip of hail MatrixTable with a small subset of UKBB summary statistics as of 12/25/2022
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path_1kg_annotations() - generate path to installed annotations file
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pcs_191k - HWE-normalized PCA scores for 3202 thousand-genomes samples genotyped with the telomere-to-telomere reference
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pcs_38k - HWE-normalized PCA scores for 3202 thousand-genomes samples genotyped with the telomere-to-telomere reference
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pheno_data_sec_2df() - pheno_data component harvesting from columns of summary stats MatrixTable
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rg_update() - update the reference genome for a hail instance
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rownames(<hail.table.Table>) - acquire row names of a Hail Table, assuming key has been set
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top2df() - top-level annotation harvesting from columns of summary statistics MatrixTable
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ukbb_init() - initialize ukbb