igsr_pops.Rdtable with metadata on populations for IGSR docType data
igsr_popsAn object of class data.frame with 212 rows and 11 columns.
data(igsr_pops)
head(igsr_pops)
#> Population code Population elastic ID Population name
#> 1 FIN FIN Finnish
#> 2 CHS CHS Southern Han Chinese
#> 3 KHV KHV Kinh Vietnamese
#> 4 BEB BEB Bengali
#> 5 PUR PUR Puerto Rican
#> 6 ACB ACB African Caribbean
#> Population description Population latitude Population longitude
#> 1 Finnish in Finland 60.17000 24.9300
#> 2 Han Chinese South 23.13333 113.2667
#> 3 Kinh in Ho Chi Minh City, Vietnam 10.78000 106.6800
#> 4 Bengali in Bangladesh 23.70000 90.3500
#> 5 Puerto Rican in Puerto Rico 18.40000 -66.1000
#> 6 African Caribbean in Barbados 13.10000 -59.6200
#> Superpopulation code Superpopulation name Superpopulation display colour
#> 1 EUR European Ancestry #018ead
#> 2 EAS East Asian Ancestry #778500
#> 3 EAS East Asian Ancestry #778500
#> 4 SAS South Asian Ancestry #c44cfd
#> 5 AMR American Ancestry #710027
#> 6 AFR African Ancestry #ffd845
#> Superpopulation display order
#> 1 4
#> 2 3
#> 3 3
#> 4 5
#> 5 2
#> 6 1
#> Data collections
#> 1 1000 Genomes on GRCh38,1000 Genomes 30x on GRCh38,Human Genome Structural Variation Consortium, Phase 2,Human Genome Structural Variation Consortium, Phase 3,1000 Genomes phase 3 release,1000 Genomes phase 1 release,Geuvadis
#> 2 1000 Genomes on GRCh38,1000 Genomes 30x on GRCh38,Human Genome Structural Variation Consortium, Phase 2,The Human Genome Structural Variation Consortium,1000 Genomes phase 3 release,1000 Genomes phase 1 release,90 Han Chinese high coverage genomes
#> 3 1000 Genomes on GRCh38,1000 Genomes 30x on GRCh38,Human Genome Structural Variation Consortium, Phase 2,Human Genome Structural Variation Consortium, Phase 3,1000 Genomes phase 3 release
#> 4 1000 Genomes on GRCh38,1000 Genomes 30x on GRCh38,Human Genome Structural Variation Consortium, Phase 2,Human Genome Structural Variation Consortium, Phase 3,1000 Genomes phase 3 release
#> 5 1000 Genomes on GRCh38,1000 Genomes 30x on GRCh38,Human Genome Structural Variation Consortium, Phase 2,The Human Genome Structural Variation Consortium,1000 Genomes phase 3 release,1000 Genomes phase 1 release
#> 6 1000 Genomes on GRCh38,1000 Genomes 30x on GRCh38,Human Genome Structural Variation Consortium, Phase 2,Human Genome Structural Variation Consortium, Phase 3,1000 Genomes phase 3 release