Reference

All functions

getGeuvRNA()

obtain a summarized experiment with GEUVADIS (Coriell) RNA-seq quantifications

igsr_pops

table with metadata on populations for IGSR docType data

install_early_t2t_txdb()

install early version of T2T TxDb, do nothing if already available

pc_190kloci

10 PCs for 3202 samples based on .05 random sample from chr17

pc_3kloci

10 PCs for 3202 samples based on .001 random sample from chr17

pc_990kloci

10 PCs for 3202 samples based on .25 random sample from chr17

strat2d()

static visualization of PCA pairs

stratapp()

multipanel app to view stratification patterns in various populations

viewStrat1KG()

visualize PCA colored by populations for a selected SuperPopulation