Skip to contents

retrieve or cache SingleCellExperiment data for spatial transcriptomics of HCC

Source: R/cache_hcc.R
get_hcc_spatial_path.Rd

retrieve or cache SingleCellExperiment data for spatial transcriptomics of HCC

Usage

get_hcc_spatial_path(sample = "1R", cache = BiocFileCache::BiocFileCache())

Arguments

sample

character(1) either "1R" or "6NR"

cache

cache instance likely inheriting from BiocFileCache::BiocFileCache

Value

character(1) path to rda file

Note

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7661255 is the basis for the "1R" example. https://pubmed.ncbi.nlm.nih.gov/37723590/ is the primary paper.

Examples

get_hcc_spatial_path()
#> [1] "/Users/vincentcarey/Library/Caches/org.R-project.R/R/BiocFileCache/525849d02c84_hcc1rYES.rda"