Get all ancestors of a term via entailed edges

Usage

get_ancestors(x, ...)

Arguments

x: A SemsqlConn object.
term_id: character(1) CURIE.
predicates: character vector of predicate CURIEs to follow. Defaults to "rdfs:subClassOf". See PREDICATES for common values.
include_self: logical(1) whether to include the term itself (default FALSE).

Value

data.frame with columns id, label, predicate.

Examples

goref <- semsql_connect(ontology = "go")
#> Connected to SemanticSQL database: /home/vincent/.cache/R/BiocFileCache/b24227f056f7_go.db
#> Primary ontology prefix: GO
get_ancestors(goref, "GO:0006915")
#>            id                 label       predicate
#> 2  GO:0008150    biological_process rdfs:subClassOf
#> 3  GO:0008219            cell death rdfs:subClassOf
#> 4  GO:0009987      cellular process rdfs:subClassOf
#> 5 BFO:0000003             occurrent rdfs:subClassOf
#> 6 BFO:0000015               process rdfs:subClassOf
#> 7  GO:0012501 programmed cell death rdfs:subClassOf
disconnect(goref)
#> Disconnected from 'b24227f056f7_go.db'