Search term labels in a SemsqlConn database

Usage

search_labels(x, ...)

Arguments

x: A SemsqlConn object.
pattern: character(1) substring to match against rdfs:label values (SQL LIKE pattern, case-insensitive on most SQLite builds).
limit: integer(1) maximum number of rows to return (default 20).

Value

data.frame with columns subject and label.

Examples

goref <- semsql_connect(ontology = "go")
#> Connected to SemanticSQL database: /home/vincent/.cache/R/BiocFileCache/b24227f056f7_go.db
#> Primary ontology prefix: GO
search_labels(goref, "apoptosis")
#>           subject
#> 1     CHEBI:68494
#> 2     CHEBI:68495
#> 3      GO:0003377
#> 4  _:riog00109215
#> 5  _:riog00112658
#> 6      GO:0006918
#> 7      GO:0006920
#> 8      GO:0006921
#> 9      GO:0006922
#> 10     GO:0006923
#> 11 _:riog00112701
#> 12     GO:0008189
#> 13     GO:0016329
#> 14     GO:0016506
#> 15     GO:0019987
#> 16     GO:0030972
#> 17     GO:0031558
#> 18     GO:0033668
#> 19 _:riog00187929
#> 20     GO:0039526
#>                                                                                  label
#> 1                                                                  apoptosis inhibitor
#> 2                                                                    apoptosis inducer
#> 3        obsolete regulation of apoptosis by sphingosine-1-phosphate signaling pathway
#> 4                                                  Apoptosis induced DNA fragmentation
#> 5                                                                            Apoptosis
#> 6                                               obsolete induction of apoptosis by p53
#> 7                                                     obsolete commitment to apoptosis
#> 8              cellular component disassembly involved in execution phase of apoptosis
#> 9                  obsolete cleavage of lamin involved in execution phase of apoptosis
#> 10 obsolete cleavage of cytoskeletal proteins involved in execution phase of apoptosis
#> 11                                                   Influenza Virus Induced Apoptosis
#> 12                                               obsolete apoptosis inhibitor activity
#> 13                                               obsolete apoptosis regulator activity
#> 14                                               obsolete apoptosis activator activity
#> 15                                      obsolete negative regulation of anti-apoptosis
#> 16    obsolete cleavage of cytosolic proteins involved in execution phase of apoptosis
#> 17                    obsolete induction of apoptosis in response to chemical stimulus
#> 18                                     symbiont-mediated suppression of host apoptosis
#> 19                                                            Suppression of apoptosis
#> 20                                    obsolete perturbation by virus of host apoptosis
disconnect(goref)
#> Disconnected from 'b24227f056f7_go.db'