get list of cluster-specific SCE for 10k PBMC annotated as in OSCA book chapter 12

Source: R/cache_citeseq_pbmcs.R

get list of cluster-specific SCE for 10k PBMC annotated as in OSCA book chapter 12

getCh12AllSce()

Value

SimpleList of SingleCellExperiment instances

Note

This is a list of SingleCellExperiment instances with data on a total of 7472 cells from a 10x CITE-seq experiment. An altExp component in each list element includes antibody-derived tag (ADT) counts on 17 proteins. The data are acquired and processed as described in ch 12 of the OSCA book, circa February 2023. List elements correspond to mRNA-based sub-clusters of ADT-based clusters.

Examples

ch12_allsce <- getCh12AllSce()
vapply(ch12_allsce, ncol, numeric(1))
#>    1    2    3    4    5    6    7    8    9   10   11   12   13   14   15   16 
#>   34  112  736  138 1351   67  879   57 1767  570   66 1032   37  416   30   33 
#>   17   18   19   20   21 
#>   21   51   12   37   26