helper to get the processed anndata for CITE-seq PBMCs from scvi-tools tutorial

helper to get the processed anndata for CITE-seq PBMCs from scvi-tools tutorial

getCiteseq5k10kPbmcs()

Value

python reference to anndata

Note

It may be advantageous to set `options(timeout=3600)` or to allow an even greater time for internet downloads, if working at a relatively slow network connection.

Examples

getCiteseq5k10kPbmcs()
#> AnnData object with n_obs × n_vars = 10849 × 4000
#>     obs: 'n_genes', 'percent_mito', 'n_counts', 'batch', '_scvi_labels', '_scvi_batch'
#>     var: 'highly_variable', 'highly_variable_rank', 'means', 'variances', 'variances_norm', 'highly_variable_nbatches'
#>     uns: '_scvi_manager_uuid', '_scvi_uuid', 'hvg', 'log1p'
#>     obsm: 'protein_expression'
#>     layers: 'counts'