get anndata reference to full totalVI processing of 5k10k data

get anndata reference to full totalVI processing of 5k10k data

getTotalVI5k10kAdata()

Value

python reference to anndata

Examples

full <- getTotalVI5k10kAdata()
full
#> AnnData object with n_obs × n_vars = 10849 × 4000
#>     obs: 'n_genes', 'percent_mito', 'n_counts', 'batch', '_scvi_labels', '_scvi_batch', 'leiden_totalVI'
#>     var: 'highly_variable', 'highly_variable_rank', 'means', 'variances', 'variances_norm', 'highly_variable_nbatches'
#>     uns: '_scvi_manager_uuid', '_scvi_uuid', 'hvg', 'leiden', 'log1p', 'neighbors', 'umap'
#>     obsm: 'X_totalVI', 'X_umap', 'denoised_protein', 'protein_expression', 'protein_foreground_prob'
#>     layers: 'counts', 'denoised_rna'
#>     obsp: 'connectivities', 'distances'