app to explore diversity in RNA-subclusters within ADT clusters

app to explore diversity in RNA-subclusters within ADT clusters

exploreSubcl(sce, inlist, adtcls)

Arguments

sce

a SingleCellExperiment with altExp with ADT quantification

inlist

list of SingleCellExperiments (SCEs) formed by scran::quickSubCluster

adtcls

vector of ADT cluster assignments

Value

shinyApp instance

Note

TSNE should already be available in `altExp(sce)`; follow OSCA book 12.5.2. If using example, set `ask=FALSE`.

Examples

if (FALSE) {
sce <- getCh12Sce()
all.sce <- getCh12AllSce()
data(clusters.adt)
runApp(exploreSubcl(sce, all.sce, clusters.adt)) # trips up interactive pkgdown?)
}